Internal API

This page provides an auto-generated summary of the feisty API.

Model components

benthic_prey_type(group_ind, mod_params, ...)	Data structure containing benthic prey parameters.
fish_type(group_ind, domain_params, ...)
fishing(domain_params, fishing_rate_per_year)	Data structure containing fishing parameters
food_web(feeding_settings, member_obj_list, ...)	Data structure defining feeding relationships.
food_web_link(food_web, i)	Information describing an individual feeding link.
reproduction_link(ndx_from, i_fish_from, ...)	Data structure with the information pertaining to a specific link in reproduction routing list.
reproduction_routing(routing_settings, ...)	Data structure to store reproduction routing information.
zooplankton_type(group_ind, mod_params, ...)	Data structure containing zooplankton parameters.

Process

compute_rate_T_mass_scaling(T, mass, k, a, b)
compute_t_frac_pelagic(t_frac_pelagic, ...)	Return the fraction of time spent in the pelagic.
t_weighted_mean_temp(T_pelagic, T_bottom, ...)	Compute the time-weighted mean temperature.
compute_metabolism(metabolism_rate, ...)	Compute metabolic rate.
compute_pred_encounter_consumption_max(...)	Compute predator encounter and maximum consumption rates.
compute_encounter(encounter_rate_link, ...)	Compute encounter rates.
compute_consumption(consumption_rate_link, ...)	Consumption rates.
compute_rescale_zoo_consumption(...)	Limit zooplankton consumption by mortality term.
compute_ingestion(ingestion_rate, ...)	Compute ingestion.
compute_predation(predation_flux, ...)	Compute predation.
compute_natural_mortality(mortality_rate, ...)	Compute natural mortality.
compute_energy_avail(energy_avail_rate, ...)	Compute energy available for growth (nu).
compute_growth(growth_rate, ...)	Compute energy available for somatic growth (gamma).
compute_reproduction(reproduction_rate, ...)	Compute reproduction from energy available for growth and reproduction (nu) and energy available for somatic growth (gamma).
compute_recruitment(recruitment_flux, ...)	Compute "recruitment" from reproduction (i.e., larval production) or growth.
compute_total_tendency(total_tendency, ...)	Compute the total time tendency of fish.
compute_fish_catch(fish_catch_rate, ...)	Compute fishing rate.